5' splice sites
MaxEntScan::score5ss scores 9 mers using different 5'ss models
To score 3' splice sites go to MaxEntScan::score3ss
To build your own MaxEntScan models as described in the paper (below) refer to MaxEntScan::build
Reference: Yeo G and Burge C.B., Maximum Entropy Modeling of Short Sequence Motifs with Applications to RNA Splicing Signals, RECOMB 2003
For questions and comments please email Gene at firstname.lastname@example.org.
Each sequence must be 9 bases long. [3 bases in exon][6 bases in intron]
Input sequences as a FastA file with one sequence per line (no linebreaks). Non-ACGT sequences will not be processed.
Example Fasta File