for human 3' splice sites
MaxEntScan::score3ss scores 23 mers using different 3'ss models
To score 5' splice sites go to MaxEntScan::score5ss
To build your own MaxEntScan models as described in the paper (below) refer to MaxEntScan::build
Reference: Yeo G and Burge C.B., Maximum Entropy Modeling of Short Sequence Motifs with Applications to RNA Splicing Signals, RECOMB 2003
For questions and comments please email Gene at firstname.lastname@example.org.
Each sequence must be 23 bases long. [20 bases in the intron][3 base in the exon]
Input sequences as a FastA file with one sequence per line (no linebreaks). Non-ACGT sequences will not be processed.
Example Fasta File